Tutorials#
End-to-end notebooks for applying a pretrained TERRA model to your own spatial data. Running them requires an NVIDIA GPU.
Quickstart: Single Sample
Embed one spatial sample with a pretrained model and identify cell types and spatial niches.
Quickstart: Multiple Samples
Embed several sections/donors together and integrate them into a shared space.
Downstream Analysis
Gene-level embeddings, spatial gene-pair scoring, spatial structure (Earth Mover’s Distance), subsetting, and in-silico perturbation.